evo-lmm documentation#
evo-lmm implements the evolutionary random-effects linear mixed model
with raw diploid dosage data and GRGL-backed genotype representation graphs.
The documentation follows the overview, how-to, tutorial, and reference
organization used by GRGL and
GRAPP.
Contents
The model keeps the focal-trait effect beta_j distinct from the latent
selected-trait effect alpha_j. Frequencies are sample allele frequencies,
and the genotype boundary uses raw diploid dosage without an implicit
1 / M kernel normalization.