Index A | B | C | D | E | F | G | H | I | J | K | L | M | P | R | S | T | V | W A allele_frequency_q() (in module evo_lmm) apply_component_derivatives_matmat() (evo_lmm.MultiComponentOps method) apply_dh() (evo_lmm.EvolutionaryLmmOps method) apply_dh_matmat() (evo_lmm.EvolutionaryLmmOps method) (evo_lmm.MultiComponentOps method) apply_dk() (evo_lmm.EvolutionaryLmmOps method) apply_h() (evo_lmm.EvolutionaryLmmOps method) apply_k() (evo_lmm.EvolutionaryLmmOps method) (evo_lmm.MultiComponentOps method) apply_k_matmat() (evo_lmm.EvolutionaryLmmOps method) apply_model_x() (evo_lmm.EvolutionaryLmmOps method) apply_shape_matmat() (evo_lmm.MultiComponentOps method) association() (in module evo_lmm) association_summary() (in module evo_lmm) AssociationResult (class in evo_lmm) B blup() (evo_lmm.FitResult method) boundary_lrt_pvalue() (in module evo_lmm) C calibrate_association() (in module evo_lmm) CalibrationResult (class in evo_lmm) chromosome_frequencies() (evo_lmm.EvolutionaryLmmOps method) collapse_mac() (in module evo_lmm) CollapsedVariants (class in evo_lmm) convergence_statistics() (in module evo_lmm) ConvergenceReport (class in evo_lmm) coordinates() (evo_lmm.EvolutionaryPrior method) D delta_method_se() (in module evo_lmm) dense_kernel() (evo_lmm.EvolutionaryLmmOps method) dense_variant_data() (in module evo_lmm) DenseREMLOracle (class in evo_lmm) derivative_kernels() (evo_lmm.MultiComponentOps method) E evo_lmm module EvolutionaryLmmOps (class in evo_lmm) EvolutionaryPrior (class in evo_lmm) exact_average_information() (in module evo_lmm) exact_reml_loglikelihood() (in module evo_lmm) exact_reml_score() (in module evo_lmm) F factor (evo_lmm.CalibrationResult attribute) fit_dense_reml() (in module evo_lmm) fit_evolutionary_bolt() (in module evo_lmm) fit_evolutionary_bolt_lmm() (in module evo_lmm) fit_evolutionary_lmm() (in module evo_lmm) fit_evolutionary_reml() (in module evo_lmm) fit_genes() (in module evo_lmm) fit_multicomponent_reml() (in module evo_lmm) fit_parameter_profiles() (in module evo_lmm) fit_rare_effect_baseline() (in module evo_lmm) fit_reml() (in module evo_lmm) fit_report() (in module evo_lmm) fit_tau_profiles() (in module evo_lmm) FitDiagnostics (class in evo_lmm) FitReport (class in evo_lmm) FitResult (class in evo_lmm) flat() (evo_lmm.MultiComponentPrior class method) flat_prior() (in module evo_lmm) from_dense() (evo_lmm.EvolutionaryLmmOps class method) from_operators() (evo_lmm.MultiComponentOps class method) FullPrior (class in evo_lmm) G gene_component_report() (in module evo_lmm) GeneComponentReport (class in evo_lmm) genic_variance_by_maf() (in module evo_lmm) good() (evo_lmm.AssociationResult method) grg_variant_data() (in module evo_lmm) GrgSimulation (class in evo_lmm) H haseman_elston_initialization() (in module evo_lmm) heritability_conventions() (in module evo_lmm) HeritabilityEstimates (class in evo_lmm) I inverse_scale (evo_lmm.CalibrationResult attribute) J joint_mom_initialization() (in module evo_lmm) K kernel_trace() (evo_lmm.EvolutionaryLmmOps method) (evo_lmm.MultiComponentOps method) L local_indices() (evo_lmm.EvolutionaryLmmOps method) loco_solutions() (in module evo_lmm) loco_solve() (in module evo_lmm) M model_mask (evo_lmm.TestVariantStats attribute) model_scores() (evo_lmm.EvolutionaryLmmOps method) module evo_lmm MoMResult (class in evo_lmm) MultiComponentFit (class in evo_lmm) MultiComponentOps (class in evo_lmm) MultiComponentPrior (class in evo_lmm) P predict_blup() (in module evo_lmm) prior_from_coordinates() (in module evo_lmm) prior_from_parameters() (in module evo_lmm) profile_tau() (in module evo_lmm) profiled_average_information() (in module evo_lmm) profiled_reml_objective() (in module evo_lmm) ProfileLikelihood (class in evo_lmm) project() (evo_lmm.MultiComponentOps method) projected_norm2 (evo_lmm.TestVariantStats attribute) R rare_effect_mom_ratio() (in module evo_lmm) RareEffectBaselineResult (class in evo_lmm) residuals (evo_lmm.CalibrationResult attribute) restricted_log_likelihood() (in module evo_lmm) S sample_allele_frequencies() (in module evo_lmm) select_calibration_variants() (in module evo_lmm) sigma_g2 (evo_lmm.FitResult property) SimplifiedPrior (class in evo_lmm) simulate_grg_lmm() (in module evo_lmm) solve_ph() (evo_lmm.EvolutionaryLmmOps method) std_projected_norm2 (evo_lmm.TestVariantStats attribute) T test_column() (evo_lmm.EvolutionaryLmmOps method) test_scores() (evo_lmm.EvolutionaryLmmOps method) test_stats() (evo_lmm.EvolutionaryLmmOps method) TestVariantStats (class in evo_lmm) V VariantData (class in evo_lmm) W with_shared_tau() (evo_lmm.MultiComponentPrior method)